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OboTerm Type

Namespace: BioFSharp.FileFormats
Assembly: BioFSharp.dll
Parent Module: Obo
Base Type: obj
All Interfaces: IEquatable<OboTerm> , IStructuralEquatable , IComparable<OboTerm> , IComparable , IStructuralComparable

obo term record type

Record fields

Record Field Description

AltIds

Full Usage: AltIds

Field type: string list

Defines an alternate id for this term.

Field type: string list

BuiltIn

Full Usage: BuiltIn

Field type: bool

Whether or not this term or relation is built in to the OBO format.

Field type: bool

Comment

Full Usage: Comment

Field type: string

A comment for this term.

Field type: string

Consider

Full Usage: Consider

Field type: string list
Field type: string list

CreatedBy

Full Usage: CreatedBy

Field type: string

Name of the creator of the term. May be a short username, initials or ID.

Field type: string

CreationDate

Full Usage: CreationDate

Field type: string

Date of creation of the term specified in ISO 8601 format. Example: 2009-04-13T01:32:36Z

Field type: string

Definition

Full Usage: Definition

Field type: string

The definition of the current term.

Field type: string

DisjointFrom

Full Usage: DisjointFrom

Field type: string list

indicates that a term is disjoint from another, meaning that the two terms have no instances or subclasses in common.

Field type: string list

Id

Full Usage: Id

Field type: string

The unique id of the current term.

Field type: string

IntersectionOf

Full Usage: IntersectionOf

Field type: string list
Field type: string list

IsA

Full Usage: IsA

Field type: string list
Field type: string list

IsAnonymous

Full Usage: IsAnonymous

Field type: bool

Whether or not the current object has an anonymous id.

Field type: bool

IsObsolete

Full Usage: IsObsolete

Field type: bool

Whether or not this term is obsolete.

Field type: bool

Name

Full Usage: Name

Field type: string

The term name.

Field type: string

PropertyValues

Full Usage: PropertyValues

Field type: string list
Field type: string list

Relationships

Full Usage: Relationships

Field type: string list

The value of this tag should be the relationship type id, and then the id of the target term, plus, optionally, other target terms. The relationship type

Field type: string list

Replacedby

Full Usage: Replacedby

Field type: string list

Gives a term which replaces an obsolete term. The value is the id of the replacement term.

Field type: string list

Subsets

Full Usage: Subsets

Field type: string list

This tag indicates a term subset to which this term belongs.

Field type: string list

Synonyms

Full Usage: Synonyms

Field type: TermSynonym list

This tag gives a synonym for this term, some xrefs to describe the origins of the synonym, and may indicate a synonym category or scope information.

Field type: TermSynonym list

UnionOf

Full Usage: UnionOf

Field type: string list

indicates that this term represents the union of several other terms.

Field type: string list

Xrefs

Full Usage: Xrefs

Field type: DBXref list

Cross references that describe analagous terms in another vocabularies.

Field type: DBXref list

Static members

Static member Description

OboTerm.create id name isAnonymous altIds definition comment subsets synonyms xrefs isA intersectionOf unionOf disjointFrom relationships isObsolete replacedby consider propertyValues builtIn createdBy creationDate

Full Usage: OboTerm.create id name isAnonymous altIds definition comment subsets synonyms xrefs isA intersectionOf unionOf disjointFrom relationships isObsolete replacedby consider propertyValues builtIn createdBy creationDate

Parameters:
    id : string
    name : string
    isAnonymous : bool
    altIds : string list
    definition : string
    comment : string
    subsets : string list
    synonyms : TermSynonym list
    xrefs : DBXref list
    isA : string list
    intersectionOf : string list
    unionOf : string list
    disjointFrom : string list
    relationships : string list
    isObsolete : bool
    replacedby : string list
    consider : string list
    propertyValues : string list
    builtIn : bool
    createdBy : string
    creationDate : string

Returns: OboTerm

Creates an obo term record

id : string
name : string
isAnonymous : bool
altIds : string list
definition : string
comment : string
subsets : string list
synonyms : TermSynonym list
xrefs : DBXref list
isA : string list
intersectionOf : string list
unionOf : string list
disjointFrom : string list
relationships : string list
isObsolete : bool
replacedby : string list
consider : string list
propertyValues : string list
builtIn : bool
createdBy : string
creationDate : string
Returns: OboTerm

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