FastaItem<'SequenceItem> (BioFSharp) | BioFSharp

FastaItem<'SequenceItem> Type

Namespace: BioFSharp.FileFormats
Assembly: BioFSharp.dll
Parent Module: Fasta
Base Type: obj
All Interfaces: IEquatable<FastaItem<'SequenceItem>> , IStructuralEquatable

A FastaItem represents a sequence record in a fasta formatted file, consisting of header line and sequence

Record fields

Record Field	Description
`Header` Full Usage: `Header` Field type: `string`	Field type: `string`
`Sequence` Full Usage: `Sequence` Field type: `'SequenceItem seq`	Field type: `'SequenceItem seq`

Static members

Static member	Description
`FastaItem.create header sequence` Full Usage: `FastaItem.create header sequence` Parameters: header : `string` - The header line of the sequence record sequence : `'a` - The sequence Returns: `FastaItem<'SequenceItem0>` Modifiers: inline	Creates a fasta item representing a single sequence record in a fasta formatted file. header : `string` The header line of the sequence record sequence : `'a` The sequence Returns: `FastaItem<'SequenceItem0>`
`FastaItem.ofTaggedSequence tagConverter sequenceItemConverter taggedSeq` Full Usage: `FastaItem.ofTaggedSequence tagConverter sequenceItemConverter taggedSeq` Parameters: tagConverter : `'Tag -> string` - sequenceItemConverter : `'TaggedSequenceItem -> 'SequenceItem` taggedSeq : `TaggedSequence<'Tag, 'TaggedSequenceItem>` - the tagged sequence to convert Returns: `FastaItem<'SequenceItem>` Modifiers: inline Type parameters: 'TaggedSequenceItem	Creates a fasta item from a tagged sequence. tagConverter : `'Tag -> string` sequenceItemConverter : `'TaggedSequenceItem -> 'SequenceItem` taggedSeq : `TaggedSequence<'Tag, 'TaggedSequenceItem>` the tagged sequence to convert Returns: `FastaItem<'SequenceItem>`
`FastaItem.toLines sequenceItemConverter fsa` Full Usage: `FastaItem.toLines sequenceItemConverter fsa` Parameters: sequenceItemConverter : `'SequenceItem -> char` - A function to convert sequence items to characters fsa : `FastaItem<'SequenceItem>` - the fasta item to convert Returns: `string seq`	Converts the FastaItem to a sequence of lines. The header line is prefixed with '>' and the sequence is split into chunks of 80 characters. sequenceItemConverter : `'SequenceItem -> char` A function to convert sequence items to characters fsa : `FastaItem<'SequenceItem>` the fasta item to convert Returns: `string seq`
`FastaItem.toString sequenceItemConverter fsa` Full Usage: `FastaItem.toString sequenceItemConverter fsa` Parameters: sequenceItemConverter : `'SequenceItem -> char` - A function to convert sequence items to characters fsa : `FastaItem<'SequenceItem>` - the fasta item to convert Returns: `string`	Converts the FastaItem to a string. The header line is prefixed with '>' and the sequence is split into chunks of 80 characters per line. sequenceItemConverter : `'SequenceItem -> char` A function to convert sequence items to characters fsa : `FastaItem<'SequenceItem>` the fasta item to convert Returns: `string`
`FastaItem.toTaggedSequence headerConverter fsa` Full Usage: `FastaItem.toTaggedSequence headerConverter fsa` Parameters: headerConverter : `string -> 'Tag` - A function to convert header to tag fsa : `FastaItem<'SequenceItem>` - the fasta item to convert Returns: `TaggedSequence<'Tag, 'SequenceItem>` Modifiers: inline	Converts the FastaItem to a tagged sequence. The header line is converted to a tag type of choice using the provided converter function. headerConverter : `string -> 'Tag` A function to convert header to tag fsa : `FastaItem<'SequenceItem>` the fasta item to convert Returns: `TaggedSequence<'Tag, 'SequenceItem>`