GeneralOptions (BioFSharp.Mz)

GeneralOptions Type

Namespace: BioFSharp.Mz
Assembly: BioFSharp.Mz.dll
Parent Module: Parameters
Base Type: obj
All Interfaces: IEquatable<GeneralOptions> , IStructuralEquatable , IComparable<GeneralOptions> , IComparable , IStructuralComparable

Union case	Description
`Help` Full Usage: `Help`	Display the help message
`OnlyPSMs` Full Usage: `OnlyPSMs`	Do not remove redundant peptides, keep all PSMs and exclude peptide level probabilities.
`PostProcessing_MIXMAX` Full Usage: `PostProcessing_MIXMAX`	Use the mix-max method to assign q-values and PEPs. Note that this option only has an effect if the input PSMs are from separate target and decoy searches. This is the default setting.
`PostProcessing_TargetDecoyCompetition` Full Usage: `PostProcessing_TargetDecoyCompetition`	Replace the mix-max method by target-decoy competition for assigning q-values and PEPs. If the input PSMs are from separate target and decoy searches, Percolator's SVM scores will be used to eliminate the lower scoring target or decoy PSM(s) of each scan+expMass combination. If the input PSMs are detected to be coming from a concatenated search, this option will be turned on automatically, as this is incompatible with the mix-max method. In case this detection fails, turn this option on explicitly.
`VerbosityOfOutput int` Full Usage: `VerbosityOfOutput int` Parameters: Item : `int`	Set verbosity of output: 0=no processing info, 5=all. Default = 2 Item : `int`

Instance member	Description
`this.IsHelp` Full Usage: `this.IsHelp` Returns: `bool`	Returns: `bool`
`this.IsOnlyPSMs` Full Usage: `this.IsOnlyPSMs` Returns: `bool`	Returns: `bool`
`this.IsPostProcessing_MIXMAX` Full Usage: `this.IsPostProcessing_MIXMAX` Returns: `bool`	Returns: `bool`
`this.IsPostProcessing_TargetDecoyCompetition` Full Usage: `this.IsPostProcessing_TargetDecoyCompetition` Returns: `bool`	Returns: `bool`
`this.IsVerbosityOfOutput` Full Usage: `this.IsVerbosityOfOutput` Returns: `bool`	Returns: `bool`