Fastq (BioFSharp) | BioFSharp

Fastq Module

Namespace: BioFSharp.IO
Assembly: BioFSharp.dll

Functions to read and write fastq formatted files

Functions and values

Function or value	Description
`read converter qualityConverter filePath` Full Usage: `read converter qualityConverter filePath` Parameters: converter : `char seq -> 'a` qualityConverter : `char seq -> 'c` filePath : `string` Returns: `FastqItem<'b, 'd> seq`	Reads FastqItem from FastQ format file. Converter and qualityConverter determines type of sequence by converting seq -> type converter : `char seq -> 'a` qualityConverter : `char seq -> 'c` filePath : `string` Returns: `FastqItem<'b, 'd> seq`
`readGZip converter qualityConverter filePath` Full Usage: `readGZip converter qualityConverter filePath` Parameters: converter : `char seq -> 'a` qualityConverter : `char seq -> 'c` filePath : `string` Returns: `FastqItem<'b, 'd> seq`	Reads FastqItem from GZip format file. Converter and qualityConverter determines type of sequence by converting seq -> type converter : `char seq -> 'a` qualityConverter : `char seq -> 'c` filePath : `string` Returns: `FastqItem<'b, 'd> seq`
`readLines sequenceConverter qualitySequenceConverter lines` Full Usage: `readLines sequenceConverter qualitySequenceConverter lines` Parameters: sequenceConverter : `char seq -> 'a` qualitySequenceConverter : `char seq -> 'b` lines : `string seq` Returns: `FastqItem<'SequenceItem, 'QualitySequenceItem> seq`	Maps each lines from an entry to FastqItem sequenceConverter : `char seq -> 'a` qualitySequenceConverter : `char seq -> 'b` lines : `string seq` Returns: `FastqItem<'SequenceItem, 'QualitySequenceItem> seq`