GenBank (BioFSharp) | BioFSharp

GenBank Module

Namespace: BioFSharp.FileFormats
Assembly: BioFSharp.dll

functions for reading and writing GenBank files

Types

Type	Description
Feature	Represents a single feature from the FEATURES section of a GenBank file. Features can contain Information about genes and gene products, as well as regions of biological significance reported in the sequence
FeatureQualifier	Represents a single feature Qualifier and its value from the FEATURES section of a Genbank file. Features can contain Information about genes and gene products, as well as regions of biological significance reported in the sequence
GenBankItem<'SequenceItem>	Represents any Item a GenBank file can contain as a union case. The result of parsing a genBank file will be a dictionary containing this type.

Functions and values

Function or value	Description
`getFeatures gb` Full Usage: `getFeatures gb` Parameters: gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `Feature list`	Returns all features of a GenBank file representation gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `Feature list`
`getFeaturesWithType featureType gb` Full Usage: `getFeaturesWithType featureType gb` Parameters: featureType : `string` gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `Feature list`	Returns all features of a specific type of a GenBank file representation featureType : `string` gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `Feature list`
`getOrigin gb` Full Usage: `getOrigin gb` Parameters: gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `'SequenceItem seq`	Returns the Origin of a GenBank file representation gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `'SequenceItem seq`
`getReferences gb` Full Usage: `getReferences gb` Parameters: gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `(string * string) list list`	Returns all references of a GenBank file representation gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `(string * string) list list`
`getValues gb` Full Usage: `getValues gb` Parameters: gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `(string * string) list`	Returns all Values of the meta section of a Genbank file representation gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `(string * string) list`
`toLines originSequenceConverter gb` Full Usage: `toLines originSequenceConverter gb` Parameters: originSequenceConverter : `'SequenceItem seq -> char seq` gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `string seq`	creates a GenBank file at the specified path, taking a converter function for the origin sequence of the file originSequenceConverter : `'SequenceItem seq -> char seq` gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `string seq`
`toString originSequenceConverter gb` Full Usage: `toString originSequenceConverter gb` Parameters: originSequenceConverter : `'SequenceItem seq -> char seq` gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `string`	originSequenceConverter : `'SequenceItem seq -> char seq` gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `string`
`tryGetItem key gb` Full Usage: `tryGetItem key gb` Parameters: key : `string` gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `GenBankItem<'SequenceItem> option`	Returns a GenBank item at the specified key, if it exists in the dictionary key : `string` gb : `Dictionary<string, GenBankItem<'SequenceItem>>` Returns: `GenBankItem<'SequenceItem> option`