Wavelet (BioFSharp.Mz) | BioFSharp.Mz

BioFSharp.Mz

Wavelet Module

Namespace: BioFSharp.Mz
Assembly: BioFSharp.Mz.dll
Parent Module: SignalDetection

Types

Type	Description
RidgeLine
WaveletParameters

Functions and values

Function or value	Description
`calcCorrWaveletAndDataMatrix waveletF nScales paddingPoints mzDataPadded intensityDataPadded mzData intensityData nPoints xSpacingAvg scalings corrMatrix` Full Usage: `calcCorrWaveletAndDataMatrix waveletF nScales paddingPoints mzDataPadded intensityDataPadded mzData intensityData nPoints xSpacingAvg scalings corrMatrix` Parameters: waveletF : `float[] -> float[] -> int -> int -> int -> float -> float -> float[]` nScales : `int` paddingPoints : `int` mzDataPadded : `float[]` intensityDataPadded : `float[]` mzData : `float[]` intensityData : `float[]` nPoints : `int[,,]` xSpacingAvg : `float[]` scalings : `float[]` corrMatrix : `float[,]` Modifiers: inline	waveletF : `float[] -> float[] -> int -> int -> int -> float -> float -> float[]` nScales : `int` paddingPoints : `int` mzDataPadded : `float[]` intensityDataPadded : `float[]` mzData : `float[]` intensityData : `float[]` nPoints : `int[,,]` xSpacingAvg : `float[]` scalings : `float[]` corrMatrix : `float[,]`
`convertColToMz mzData col` Full Usage: `convertColToMz mzData col` Parameters: mzData : `float[]` col : `int` Returns: `float`	Helperfunction to get mz back of Columnnumber mzData : `float[]` col : `int` Returns: `float`
`createPadding paddingPoints mzDataPadded intensityDataPadded mzData intensityData` Full Usage: `createPadding paddingPoints mzDataPadded intensityDataPadded mzData intensityData` Parameters: paddingPoints : `int` mzDataPadded : `float[]` intensityDataPadded : `float[]` mzData : `float[]` intensityData : `float[]`	paddingPoints : `int` mzDataPadded : `float[]` intensityDataPadded : `float[]` mzData : `float[]` intensityData : `float[]`
`createRidgeLine row col` Full Usage: `createRidgeLine row col` Parameters: row : `int` col : `int` Returns: `RidgeLine`	row : `int` col : `int` Returns: `RidgeLine`
`createWaveletParameters numberOfScales yThreshold mzTolerance sNRS_Percentile minSNR refineMZ sumIntensities` Full Usage: `createWaveletParameters numberOfScales yThreshold mzTolerance sNRS_Percentile minSNR refineMZ sumIntensities` Parameters: numberOfScales : `int` yThreshold : `float` mzTolerance : `float` sNRS_Percentile : `float` minSNR : `float` refineMZ : `bool` sumIntensities : `bool` Returns: `WaveletParameters`	numberOfScales : `int` yThreshold : `float` mzTolerance : `float` sNRS_Percentile : `float` minSNR : `float` refineMZ : `bool` sumIntensities : `bool` Returns: `WaveletParameters`
`getNpointsX centerIdx scaling maxMZwindow nPoints mzData` Full Usage: `getNpointsX centerIdx scaling maxMZwindow nPoints mzData` Parameters: centerIdx : `int` scaling : `int` maxMZwindow : `float` nPoints : `int[,,]` mzData : `float[]`	Helperfunction to calculate the mz values left and right from the target value which will be included in the computation of the CWT correlation coefficient centerIdx : `int` scaling : `int` maxMZwindow : `float` nPoints : `int[,,]` mzData : `float[]`
`getSNRFilteredPeakLines noise_perc minSnr mzTol nScales mzData allLines corrMatrix` Full Usage: `getSNRFilteredPeakLines noise_perc minSnr mzTol nScales mzData allLines corrMatrix` Parameters: noise_perc : `float` minSnr : `float` mzTol : `float` nScales : `int` mzData : `float[]` allLines : `List<RidgeLine>` corrMatrix : `float[,]`	noise_perc : `float` minSnr : `float` mzTol : `float` nScales : `int` mzData : `float[]` allLines : `List<RidgeLine>` corrMatrix : `float[,]`
`getScales nScales scalings windowMaxLow windowMaxHigh mzData intensityData xSpacingAvg nPoints xspaced` Full Usage: `getScales nScales scalings windowMaxLow windowMaxHigh mzData intensityData xSpacingAvg nPoints xspaced` Parameters: nScales : `int` scalings : `float[]` windowMaxLow : `int` windowMaxHigh : `int` mzData : `float[]` intensityData : `float[]` xSpacingAvg : `float[]` nPoints : `int[,,]` xspaced : `float[]`	nScales : `int` scalings : `float[]` windowMaxLow : `int` windowMaxHigh : `int` mzData : `float[]` intensityData : `float[]` xSpacingAvg : `float[]` nPoints : `int[,,]` xspaced : `float[]`
`refinePeaks refineMz sumIntensities yThreshold mzTol scalings mzData intensityData allLines xSpacingAvg` Full Usage: `refinePeaks refineMz sumIntensities yThreshold mzTol scalings mzData intensityData allLines xSpacingAvg` Parameters: refineMz : `bool` sumIntensities : `bool` yThreshold : `float` mzTol : `float` scalings : `float[]` mzData : `float[]` intensityData : `float[]` allLines : `ResizeArray<RidgeLine>` xSpacingAvg : `float[]` Returns: `float[] * float[]`	refineMz : `bool` sumIntensities : `bool` yThreshold : `float` mzTol : `float` scalings : `float[]` mzData : `float[]` intensityData : `float[]` allLines : `ResizeArray<RidgeLine>` xSpacingAvg : `float[]` Returns: `float[] * float[]`
`ricker2d mzDataPadded waveletData centerIdx nPointsLeft nPointsRight focusedPaddedMzValue width` Full Usage: `ricker2d mzDataPadded waveletData centerIdx nPointsLeft nPointsRight focusedPaddedMzValue width` Parameters: mzDataPadded : `float[]` waveletData : `float[]` centerIdx : `int` nPointsLeft : `int` nPointsRight : `int` focusedPaddedMzValue : `float` width : `float` Returns: `float[]`	mzDataPadded : `float[]` waveletData : `float[]` centerIdx : `int` nPointsLeft : `int` nPointsRight : `int` focusedPaddedMzValue : `float` width : `float` Returns: `float[]`
`toCentroid waveletF nScales yThreshold mzTol snrs_perc minSnr refineMZ sumIntensities mzData intensityData` Full Usage: `toCentroid waveletF nScales yThreshold mzTol snrs_perc minSnr refineMZ sumIntensities mzData intensityData` Parameters: waveletF : `float[] -> float[] -> int -> int -> int -> float -> float -> float[]` nScales : `int` yThreshold : `float` mzTol : `float` snrs_perc : `float` minSnr : `float` refineMZ : `bool` sumIntensities : `bool` mzData : `float[]` intensityData : `float[]` Returns: `float[] * float[]`	Returns a MzIntensityArray that containing the spectral centroids of the input spectra. waveletF : `float[] -> float[] -> int -> int -> int -> float -> float -> float[]` nScales : `int` yThreshold : `float` mzTol : `float` snrs_perc : `float` minSnr : `float` refineMZ : `bool` sumIntensities : `bool` mzData : `float[]` intensityData : `float[]` Returns: `float[] * float[]`
`toCentroidWithRicker2D centroidParams mzData intensityData` Full Usage: `toCentroidWithRicker2D centroidParams mzData intensityData` Parameters: centroidParams : `WaveletParameters` mzData : `float[]` intensityData : `float[]` Returns: `float[] * float[]`	centroidParams : `WaveletParameters` mzData : `float[]` intensityData : `float[]` Returns: `float[] * float[]`