AndromedaLike (BioFSharp.Mz) | BioFSharp.Mz

BioFSharp.Mz

AndromedaLike Module

Namespace: BioFSharp.Mz
Assembly: BioFSharp.Mz.dll

Types

Type	Description
MatchingScore
RatedPeak

Functions and values

Function or value	Description
`calcAndromedaLikeScoresRevDecoy calcIonSeries massfunction (arg3, arg4) (arg5, arg6) matchingTolPPM spectrum scanTime chargeState isolationWindowTargetMz possiblePeptideInfos spectrumID` Full Usage: `calcAndromedaLikeScoresRevDecoy calcIonSeries massfunction (arg3, arg4) (arg5, arg6) matchingTolPPM spectrum scanTime chargeState isolationWindowTargetMz possiblePeptideInfos spectrumID` Parameters: calcIonSeries : `(Formula -> float) -> AminoAcid list -> PeakFamily<TaggedMass> list` massfunction : `Formula -> float` arg2 : `int` arg3 : `int` arg4 : `float` arg5 : `float` matchingTolPPM : `float` spectrum : `PeakArray<'a>` scanTime : `float` chargeState : `int` isolationWindowTargetMz : `float` possiblePeptideInfos : `LookUpResult<AminoAcid> list` spectrumID : `string` Returns: `SearchEngineResult<float> list`	Calculates the AndromedaLike Scores for all peptides (possiblePeptideInfos). calcIonSeries : `(Formula -> float) -> AminoAcid list -> PeakFamily<TaggedMass> list` massfunction : `Formula -> float` arg2 : `int` arg3 : `int` arg4 : `float` arg5 : `float` matchingTolPPM : `float` spectrum : `PeakArray<'a>` scanTime : `float` chargeState : `int` isolationWindowTargetMz : `float` possiblePeptideInfos : `LookUpResult<AminoAcid> list` spectrumID : `string` Returns: `SearchEngineResult<float> list`
`calcAndromedaScore (arg1, arg2) (arg3, arg4) matchingTolPPM spectrum scanTime chargeState isolationWindowTargetMz theoreticalSpectra spectrumID` Full Usage: `calcAndromedaScore (arg1, arg2) (arg3, arg4) matchingTolPPM spectrum scanTime chargeState isolationWindowTargetMz theoreticalSpectra spectrumID` Parameters: arg0 : `int` arg1 : `int` arg2 : `float` arg3 : `float` matchingTolPPM : `float` spectrum : `PeakArray<'a>` scanTime : `float` chargeState : `int` isolationWindowTargetMz : `float` theoreticalSpectra : `TheoreticalSpectrum<PeakFamily<TaggedPeak>[]> list` spectrumID : `string` Returns: `SearchEngineResult<float> list`	Calculates the AndromedaLike scores for all theoretical spectra. arg0 : `int` arg1 : `int` arg2 : `float` arg3 : `float` matchingTolPPM : `float` spectrum : `PeakArray<'a>` scanTime : `float` chargeState : `int` isolationWindowTargetMz : `float` theoreticalSpectra : `TheoreticalSpectrum<PeakFamily<TaggedPeak>[]> list` spectrumID : `string` Returns: `SearchEngineResult<float> list`
`calcAndromedaScoreParallel (arg1, arg2) (arg3, arg4) matchingTolPPM spectrum scanTime chargeState isolationWindowTargetMz theoreticalSpectra spectrumID` Full Usage: `calcAndromedaScoreParallel (arg1, arg2) (arg3, arg4) matchingTolPPM spectrum scanTime chargeState isolationWindowTargetMz theoreticalSpectra spectrumID` Parameters: arg0 : `int` arg1 : `int` arg2 : `float` arg3 : `float` matchingTolPPM : `float` spectrum : `PeakArray<'a>` scanTime : `float` chargeState : `int` isolationWindowTargetMz : `float` theoreticalSpectra : `TheoreticalSpectrum<PeakFamily<TaggedPeak>[]> list` spectrumID : `string` Returns: `SearchEngineResult<float> list`	Calculates the AndromedaLike scores for all theoretical spectra. Implemented using Async parallel. arg0 : `int` arg1 : `int` arg2 : `float` arg3 : `float` matchingTolPPM : `float` spectrum : `PeakArray<'a>` scanTime : `float` chargeState : `int` isolationWindowTargetMz : `float` theoreticalSpectra : `TheoreticalSpectrum<PeakFamily<TaggedPeak>[]> list` spectrumID : `string` Returns: `SearchEngineResult<float> list`
`createMatchingScore score n k q` Full Usage: `createMatchingScore score n k q` Parameters: score : `float` n : `int` k : `int` q : `int` Returns: `MatchingScore`	score : `float` n : `int` k : `int` q : `int` Returns: `MatchingScore`
`createRatedPeak (arg1, arg2) moreIntensePeaks` Full Usage: `createRatedPeak (arg1, arg2) moreIntensePeaks` Parameters: arg0 : `float` arg1 : `float` moreIntensePeaks : `int` Returns: `RatedPeak`	arg0 : `float` arg1 : `float` moreIntensePeaks : `int` Returns: `RatedPeak`
`getTheoSpecs (arg1, arg2) chargeState possiblePeptideInfos` Full Usage: `getTheoSpecs (arg1, arg2) chargeState possiblePeptideInfos` Parameters: arg0 : `float` arg1 : `float` chargeState : `int` possiblePeptideInfos : `(LookUpResult<AminoAcid> * FragmentMasses) list` Returns: `TheoreticalSpectrum<PeakFamily<TaggedPeak> array> list`	Converts the fragment ion ladders to a theoretical Sequestlike spectrum at a given charge state. Subsequently, the spectrum is binned to the nearest mz bin (binwidth = 1 Da). Filters out peaks that are not within the scanLimits. arg0 : `float` arg1 : `float` chargeState : `int` possiblePeptideInfos : `(LookUpResult<AminoAcid> * FragmentMasses) list` Returns: `TheoreticalSpectrum<PeakFamily<TaggedPeak> array> list`
`predictOf (lowerScanLimit, upperScanLimit) chargeState fragments` Full Usage: `predictOf (lowerScanLimit, upperScanLimit) chargeState fragments` Parameters: lowerScanLimit : `'a` upperScanLimit : `'b` chargeState : `float` fragments : `PeakFamily<TaggedMass> list` Returns: `PeakFamily<TaggedPeak> array`	Converts the fragmentIon ladder to a theoretical spectrum at a given charge state. Filters out all theoretical peaks, that lie outside the given lower and upperScanLimits. lowerScanLimit : `'a` upperScanLimit : `'b` chargeState : `float` fragments : `PeakFamily<TaggedMass> list` Returns: `PeakFamily<TaggedPeak> array`